Package: SDMtune
Type: Package
Title: Species Distribution Model Selection
Version: 1.3.3
Authors@R: c(
	  person("Sergio", "Vignali",  email = "sdmtune@gmail.com",
	         role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3390-5442")),
	  person("Arnaud", "Barras", role = "aut",
	         comment = c(ORCID = "0000-0003-0850-6965")),
	  person("Veronika", "Braunisch", role = "aut",
	         comment = c(ORCID = "0000-0001-7035-4662")),
	  person("Conservation Biology - University of Bern", role = "fnd")
	)
Description: User-friendly framework that enables the training and the
        evaluation of species distribution models (SDMs). The package
        implements functions for data driven variable selection and
        model tuning and includes numerous utilities to display the
        results. All the functions used to select variables or to tune
        model hyperparameters have an interactive real-time chart
        displayed in the 'RStudio' viewer pane during their execution.
License: GPL-3
URL: https://consbiol-unibern.github.io/SDMtune/
BugReports: https://github.com/ConsBiol-unibern/SDMtune/issues
SystemRequirements: Java (>= 8)
Depends: R (>= 4.1.0)
Imports: cli (>= 3.4.1), dismo (>= 1.3-9), gbm (>= 2.1.5), ggplot2 (>=
        3.4.0), jsonlite (>= 1.6), maxnet (>= 0.1.4), methods, nnet (>=
        7.3-12), randomForest (>= 4.6-14), Rcpp (>= 1.0.1), rlang (>=
        0.4.5), rstudioapi (>= 0.10), stringr (>= 1.4.0), terra (>=
        1.6-47), whisker (>= 0.3-2)
Encoding: UTF-8
LazyData: true
LinkingTo: Rcpp
RoxygenNote: 7.3.2
Roxygen: list(markdown = TRUE)
Suggests: covr, htmltools (>= 0.3.6), kableExtra (>= 1.1.0), knitr (>=
        1.23), maps (>= 3.3.0), pkgdown (>= 2.0.7), plotROC (>= 2.2.1),
        rasterVis (>= 0.50), reshape2 (>= 1.4.3), rJava (>= 0.9-11),
        rmarkdown (>= 2.16), scales (>= 1.0.0), testthat (>= 3.2.3),
        withr (>= 2.5.0), zeallot (>= 0.1.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
Collate: 'ANN-class.R' 'BRT-class.R' 'Maxent-class.R' 'Maxnet-class.R'
        'RF-class.R' 'RcppExports.R' 'SWD-class.R' 'SDMmodel-class.R'
        'SDMmodel2MaxEnt.R' 'SDMmodelCV-class.R' 'SDMtune-class.R'
        'SDMtune-package.R' 'addSamplesToBg.R' 'aicc.R' 'auc.R'
        'chart-utils.R' 'checkMaxentInstallation.R' 'combineCV.R'
        'confMatrix.R' 'convertFolds.R' 'corVar.R' 'doJk.R'
        'getTunableArgs.R' 'gridSearch.R' 'maxentTh.R' 'maxentVarImp.R'
        'mergeSWD.R' 'modelReport.R' 'optimizeModel.R' 'plotCor.R'
        'plotJk.R' 'plotPA.R' 'plotPred.R' 'plotROC.R' 'plotResponse.R'
        'plotVarImp.R' 'predict-ANN.R' 'predict-BRT.R'
        'predict-Maxent.R' 'predict-Maxnet.R' 'predict-RF.R'
        'predict-SDMmodel.R' 'predict-SDMmodelCV.R' 'prepareSWD.R'
        'randomFolds.R' 'randomSearch.R' 'reduceVar.R' 'swd2csv.R'
        'thinData.R' 'thresholds.R' 'train.R' 'trainANN.R' 'trainBRT.R'
        'trainMaxent.R' 'trainMaxnet.R' 'trainRF.R' 'trainValTest.R'
        'tss.R' 'utils.R' 'varImp.R' 'varSel.R' 'virtualSp.R' 'zzz.R'
Language: en-US
Config/pak/sysreqs: libgdal-dev gdal-bin libgeos-dev default-jdk
        libicu-dev libproj-dev libsqlite3-dev
Repository: https://consbiol-unibern.r-universe.dev
Date/Publication: 2025-08-27 19:48:09 UTC
RemoteUrl: https://github.com/consbiol-unibern/sdmtune
RemoteRef: HEAD
RemoteSha: 0daa7dedc8e1db03098160bc61c86a79bfaadb4b
NeedsCompilation: yes
Packaged: 2026-06-20 06:41:16 UTC; root
Author: Sergio Vignali [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-3390-5442>),
  Arnaud Barras [aut] (ORCID: <https://orcid.org/0000-0003-0850-6965>),
  Veronika Braunisch [aut] (ORCID:
    <https://orcid.org/0000-0001-7035-4662>),
  Conservation Biology - University of Bern [fnd]
Maintainer: Sergio Vignali <sdmtune@gmail.com>